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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4588446_4589567_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4588446 - 4589567

Intron Length:

1122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

GTGCTGATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TCTTTCGTGACT

Flanking Amino Acid:

TLTISVVAGAGKELFMTEDE

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

75.1

40.8

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

69.9

0.45

62.3

43.1

Minor 5ss

40.4

-1.1

2.9

61.4

42.9

Minor BPS

61.5

0.44

2.1

82.19

39.8

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723

ENSAPLT00000009118

4566355 - 4603434

37080