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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4589965_4590379_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4589965 - 4590379

Intron Length:

415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTAACTCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TATGGATTAACT

Flanking Amino Acid:

GSLSAEVGLEVGDQIVEVNG

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

35.1

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

73.7

0.53

0.8

35.6

Minor 5ss

45.4

-0.5

2.5

59.2

45.4

Minor BPS

55.2

0.24

2.1

78.35

43.6

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009118

4566355 - 4603434

37080

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723