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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4591631_4592378_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4591631 - 4592378

Intron Length:

748

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

AATCCTTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTAATC

Flanking Amino Acid:

YVDQFVSESGEAKGSVAGLA

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

75.1

35.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.9

0.6

0.9

70.2

35.4

Minor 5ss

31.7

-2.1

3.4

46.2

Minor BPS

77.2

0.83

79.83

28.4

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035638

4564712 - 4607843

43132

ENSAPLT00000032247

4564712 - 4603434

38723

ENSAPLT00000009118

4566355 - 4603434

37080

ENSAPLT00000042047

4564712 - 4603434

38723