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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4592437_4593043_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4592437 - 4593043
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATC
Flanking Amino Acid:
VRHIGMIPVKSSADEPLKWQ
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
75.9
0.79
1
78.34
30.9

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132
ENSAPLT00000032247
4564712 - 4603434
38723
ENSAPLT00000009118
4566355 - 4603434
37080