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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4593069_4593172_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4593069 - 4593172

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAA

U12 Branch Point Sequence:

TGTTACTTAACA

Flanking Amino Acid:

TKKIVSIKVRHIGMIPVKSS

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

1.2

81.4

32.7

Major BPS

74.4

0.61

0.9

63.9

34.9

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

37.4

-1.4

2.7

Minor BPS

79.6

0.92

1.4

85.7

32.8

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032247

4564712 - 4603434

38723

ENSAPLT00000009118

4566355 - 4603434

37080

ENSAPLT00000042047

4564712 - 4603434

38723

ENSAPLT00000035638

4564712 - 4607843

43132