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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4593282_4599980_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4593282 - 4599980
Intron Length:
6699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTATTTTACA
Flanking Amino Acid:
GGQADNVGLQVGDEIVRING
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
63.6
0.31
1.7
76.7
37.1
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
58.9
0.27
1.8
71.98
40

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032247
4564712 - 4603434
38723
ENSAPLT00000009118
4566355 - 4603434
37080
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132