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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4600120_4600521_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4600120 - 4600521
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTTAT
U12 Branch Point Sequence:
TGCAGCTGAACA
Flanking Amino Acid:
EYDQLTPKRSRKLKEVRLDR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
60
0.25
1.2
51.4
43.9
Major PPT
84.3
0.77
0.7
79.4
26.1
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
49.3
-0
2
61.91
43.8

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132
ENSAPLT00000032247
4564712 - 4603434
38723
ENSAPLT00000009118
4566355 - 4603434
37080