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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4600666_4602628_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4600666 - 4602628
Intron Length:
1963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGATCT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTTCTCACT
Flanking Amino Acid:
YLYDVLRMYHQSMNLPVLVG
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
69.2
36.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.7
0.71
0.8
77.2
37.1
Minor 5ss
42.8
-0.8
3.1
63.5
41.4
Minor BPS
50.6
0.1
2
76.65
40.1

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000035638
4564712 - 4607843
43132
ENSAPLT00000032247
4564712 - 4603434
38723
ENSAPLT00000009118
4566355 - 4603434
37080