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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46008043_46019355_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46008043 - 46019355
Intron Length:
11313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CAAACTTTATCT
Flanking Amino Acid:
APRSRLTSIKLADQQRRERL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
85.3
32.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
73.6
0.53
1
78.8
27.2
Minor 5ss
41.7
-0.9
2.8
54.1
36.1
Minor BPS
53.7
0.2
1.7
66.66
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008502
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008838
46006354 - 46037627
31274