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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4602697_4603002_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4602697 - 4603002
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
TTTACAGTAATG
Flanking Amino Acid:
TFIQQYSNYQVNLLIDNEAE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
77.7
0.62
0.9
73.4
41
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
48.8
-0.2
2.3
65.3
42.6

Associated Gene:

Gene:
USH1C
Ensembl Gene ID:
ENSAPLG00000008735
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009118
4566355 - 4603434
37080
ENSAPLT00000042047
4564712 - 4603434
38723
ENSAPLT00000032247
4564712 - 4603434
38723