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Intron Name: Anas_platyrhynchos_platyrhynchos_5_4602697_4607611_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4602697 - 4607611

Intron Length:

4915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTGGATTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

TTTACAGTAATG

Flanking Amino Acid:

RRVAREFRHKVNLLIDNEAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

67.8

43.5

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

77.7

0.62

0.9

73.4

Minor 5ss

28.6

-2.5

3.5

37.8

47.1

Minor BPS

48.8

-0.2

2.3

65.3

42.6

Associated Gene:

Gene:

USH1C

Ensembl Gene ID:

ENSAPLG00000008735

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035638

4564712 - 4607843

43132