About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46032172_46033431_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46032172 - 46033431
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGCATTTATA
Flanking Amino Acid:
MTEQQKMTVKAGDNKYDVDE
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
76.8
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.6
0.62
0.9
72.8
37.5
Minor 5ss
31.6
-2.1
3.1
39.6
45.9
Minor BPS
53.9
0.12
2
72.3
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008502
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008838
46006354 - 46037627
31274