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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46033503_46034101_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46033503 - 46034101
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATCC
Flanking Amino Acid:
GIAAFPYSFLRETLLYSEQS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.8
0.6
0.9
78.8
34.4
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
71.6
0.66
1.5
79.21
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008502
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008838
46006354 - 46037627
31274