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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46034156_46035523_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46034156 - 46035523
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GTTCTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAACATTTAACA
Flanking Amino Acid:
QSSARTNIEAEEDDLLYLTF
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.5
0.73
0.8
73.9
36.8
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
57.3
0.22
1.5
62.9
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008502
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008838
46006354 - 46037627
31274