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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46063346_46065050_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46063346 - 46065050
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTCTTAAACT
Flanking Amino Acid:
HYTEPYASSQDNLFVSNQNG
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.8
0.72
0.8
78.3
34.5
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
73.5
0.82
1.6
88.47
36.7

Associated Gene:

Gene:
PTPN21
Ensembl Gene ID:
ENSAPLG00000008585
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008985
46053290 - 46085240
31951
ENSAPLT00000046700
46053290 - 46088500
35211