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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46065663_46066242_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46065663 - 46066242
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTCACCATAATA
Flanking Amino Acid:
PILSRPSLPKGQTQPVTVNP
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
62
41.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.6
0.73
0.7
78.3
29.8
Minor 5ss
37.3
-1.4
3
38.1
46.8
Minor BPS
56
0.18
1.7
64.77
41.9

Associated Gene:

Gene:
PTPN21
Ensembl Gene ID:
ENSAPLG00000008585
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046700
46053290 - 46088500
35211