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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46066345_46067547_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46066345 - 46067547
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CCTTTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
HKFYRLNKCSLDSLDSPPEE
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.9
0.65
0.8
77
31.8
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
PTPN21
Ensembl Gene ID:
ENSAPLG00000008585
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046700
46053290 - 46088500
35211