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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46075980_46084867_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46075980 - 46084867
Intron Length:
8888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGTTTCATCACT
Flanking Amino Acid:
AVAQRLELREITYFSLWYYN
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
77
0.61
0.8
72.9
32
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
57.2
0.31
2
81.33
40.1

Associated Gene:

Gene:
PTPN21
Ensembl Gene ID:
ENSAPLG00000008585
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008985
46053290 - 46085240
31951
ENSAPLT00000046700
46053290 - 46088500
35211