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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46104516_46106368_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46104516 - 46106368
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTACCTTTATT
Flanking Amino Acid:
SVTKTTNYSTVPQKQTVPVA
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
74.2
0.54
1
74.4
33.1
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
72.5
0.79
1.6
89.05
35.4

Associated Gene:

Gene:
ZC3H14
Ensembl Gene ID:
ENSAPLG00000008694
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031291
46093174 - 46116346
23173