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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46104516_46107981_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46104516 - 46107981
Intron Length:
3466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ATGTTCCTAATT
Flanking Amino Acid:
SVTKTTNYSTGAEQKELSSR
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.4
0.66
0.8
78.1
35
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
63.3
0.49
1.6
78.54
38

Associated Gene:

Gene:
ZC3H14
Ensembl Gene ID:
ENSAPLG00000008694
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009101
46093174 - 46115363
22190