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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46124719_46125031_R

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
46124719 - 46125031
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGGAAAACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACC
Flanking Amino Acid:
YVVSAGGDDCSLFVWKCVHM
Intron Amino Acid Position:
1963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
52.5
0.06
1.1
43.8
40.3
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009286
46124682 - 46228808
104127
ENSAPLT00000030059
46124682 - 46228808
104127
ENSAPLT00000022285
46124682 - 46228808
104127