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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4613318_4613432_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4613318 - 4613432
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAC
U12 Branch Point Sequence:
GCTGAGCAAACT
Flanking Amino Acid:
LPPDGHLPLLSTGSAAGPRG
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
47.4
-0.1
1
50.7
32.1
Major PPT
72.1
0.5
0.8
68.8
31.7
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
35.6
-1
2.5
53.85
47.1

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869