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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46141554_46142418_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46141554 - 46142418
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATCT
Flanking Amino Acid:
NVGKKKRPIEDLILELVFGY
Intron Amino Acid Position:
1367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
0.8
74
35.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
72.3
0.78
1.8
93.48
34.4

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030059
46124682 - 46228808
104127
ENSAPLT00000022285
46124682 - 46228808
104127
ENSAPLT00000009286
46124682 - 46228808
104127