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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46142498_46153032_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46142498 - 46153032
Intron Length:
10535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGTTCTTTATTT
Flanking Amino Acid:
PTLDERQGVVRPPVSRALPQ
Intron Amino Acid Position:
1340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
65.9
0.58
1.5
78.88
37.7

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009286
46124682 - 46228808
104127