Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46142498_46154489_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46142498 - 46154489

Intron Length:

11992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

AGTTCTTTATTT

Flanking Amino Acid:

LQQKEPTLDERPPVSRALPQ

Intron Amino Acid Position:

1300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

35.5

Major BPS

83.9

0.84

73.9

41.3

Major PPT

90.2

0.9

0.7

89.1

26.1

Minor 5ss

40.9

-1

3.2

59.5

Minor BPS

65.9

0.58

1.5

78.88

37.7

Associated Gene:

Gene:

EML5

Ensembl Gene ID:

ENSAPLG00000008892

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030059

46124682 - 46228808

104127

ENSAPLT00000022285

46124682 - 46228808

104127