About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46154617_46155325_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46154617 - 46155325
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTTTGATA
Flanking Amino Acid:
ESDLDSEEDGGYDSDVTREN
Intron Amino Acid Position:
1293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89
0.88
0.7
88.9
28.2
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
63.6
0.42
1.3
72.69
33.6

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022285
46124682 - 46228808
104127
ENSAPLT00000009286
46124682 - 46228808
104127
ENSAPLT00000030059
46124682 - 46228808
104127