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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46164437_46166289_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46164437 - 46166289
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
IKHLKFWRRAGGGLIGRKGC
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
1
68
41.4
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030059
46124682 - 46228808
104127
ENSAPLT00000022285
46124682 - 46228808
104127
ENSAPLT00000009286
46124682 - 46228808
104127