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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46166391_46168730_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46166391 - 46168730
Intron Length:
2340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTGCTTTATAT
Flanking Amino Acid:
WKKGEKLSAVRGSKDKIFVV
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
84.6
33.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.4
0.77
0.8
81.7
34.3
Minor 5ss
38
-1.4
3.4
57.1
47.2
Minor BPS
60.3
0.4
1.8
80.79
41.2

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030059
46124682 - 46228808
104127
ENSAPLT00000022285
46124682 - 46228808
104127
ENSAPLT00000009286
46124682 - 46228808
104127