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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46168825_46169824_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46168825 - 46169824
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ACTCTCTCAATT
Flanking Amino Acid:
QYGVCAVDFSADGKRLASVG
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
77.4
37.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81
0.7
0.9
73.6
41.7
Minor 5ss
35.3
-1.7
3
50
45.8
Minor BPS
58.4
0.34
1.5
71.65
39.6

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030059
46124682 - 46228808
104127
ENSAPLT00000022285
46124682 - 46228808
104127
ENSAPLT00000009286
46124682 - 46228808
104127