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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46171601_46179582_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46171601 - 46179582
Intron Length:
7982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
ATGACCTTGATG
Flanking Amino Acid:
GNSIRLHFVHGYRGYDCRSN
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
86.8
0.83
0.7
86.1
27.7
Minor 5ss
38.4
-1.3
2.8
40.2
45.6
Minor BPS
61.8
0.22
1.4
61.33
40.9

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030059
46124682 - 46228808
104127
ENSAPLT00000022285
46124682 - 46228808
104127
ENSAPLT00000009286
46124682 - 46228808
104127