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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46190928_46194898_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46190928 - 46194898
Intron Length:
3971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACAAT
U12 Branch Point Sequence:
AATCTCTTACTT
Flanking Amino Acid:
DLRETDQGYKGLSVRSVCWR
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
57.4
0.18
1.3
65.4
38
Major PPT
85.5
0.8
0.8
79.5
32.4
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
58.3
0.34
1.6
72.6
38.4

Associated Gene:

Gene:
EML5
Ensembl Gene ID:
ENSAPLG00000008892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009286
46124682 - 46228808
104127