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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46241392_46254456_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46241392 - 46254456
Intron Length:
13065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TATCCTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTATCCTTATTC
Flanking Amino Acid:
QLLEAVPGEQAAWSLKTRAL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79.7
0.67
0.9
77.7
35.3
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
72.6
0.69
1.5
79.27
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021050
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031511
46241278 - 46259010
17733