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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46248467_46254456_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46248467 - 46254456
Intron Length:
5990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTATCCTTATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79.7
0.67
0.9
77.7
35.3
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
72.6
0.69
1.5
79.27
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008999
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009383
46241278 - 46271939
30662