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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46254578_46258915_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46254578 - 46258915
Intron Length:
4338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGAACG
5'SS Class:
major
3'SS Sequence:
TCTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
ATGCTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
69
41.8
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
84.7
0.78
0.7
80.1
31.6
Minor 5ss
35.2
-1.7
2.9
41.4
37.8
Minor BPS
57
0.3
1.6
71.18
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008999
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009383
46241278 - 46271939
30662
Gene:
Ensembl Gene ID:
ENSAPLG00000021050
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031511
46241278 - 46259010
17733