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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4631222_4632067_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4631222 - 4632067
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGATC
5'SS Class:
major
3'SS Sequence:
TCTTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATCTCTTTAATT
Flanking Amino Acid:
CLTQSHESLQRAYTLCNILL
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
70.7
39.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.7
0.76
0.8
77.6
34.4
Minor 5ss
39.3
-1.2
3
51.9
45
Minor BPS
79.3
1
1
85.82
34.8

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869