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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4632175_4633057_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4632175 - 4633057
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTGTGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
FMASCTSDLCMSAVDNATWC
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.9
0.34
1.2
71.7
42.9
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869