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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4633168_4633997_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4633168 - 4633997
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCAGA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTCTAT
U12 Branch Point Sequence:
AGAGCTCTATCT
Flanking Amino Acid:
QGWRKHFQQCVITCLEPLTY
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
63.3
42.6
Major BPS
47.4
-0.1
1.5
46.4
46.5
Major PPT
84.4
0.77
0.7
80.5
31.5
Minor 5ss
45
-0.5
2.6
54.4
44.8
Minor BPS
45
-0.3
1.9
60.66
42.8

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869