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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46334214_46341538_F

Intron Information:

Intron Rank:
144040
Intron Class:
major
Intron Phase:
Intron Coordinates:
46334214 - 46341538
Intron Length:
7325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATTTCACTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
74.4
0.55
0.8
68.3
32
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
60
0.39
2
84.1
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039565
46333407 - 46342236
8830