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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46334214_46349906_F

Intron Information:

Intron Rank:
144039
Intron Class:
major
Intron Phase:
Intron Coordinates:
46334214 - 46349906
Intron Length:
15693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCACCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ACGTTTGTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
73
0.52
0.9
63
38.6
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
51.6
0.13
2
68.84
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027638
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021180
46333407 - 46350257
16851