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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4634124_4635081_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4634124 - 4635081
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TTATTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTGATA
Flanking Amino Acid:
PCIDGCYCPDGLIYENELCV
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
71.6
38.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.8
0.7
81.7
30
Minor 5ss
42
-0.9
3.5
61.7
44.2
Minor BPS
80.4
0.95
0.9
85.58
26.2

Associated Gene:

Gene:
OTOG
Ensembl Gene ID:
ENSAPLG00000008072
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008416
4613122 - 4697990
84869