Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4636092_4636631_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4636092 - 4636631

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTAGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTATTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

ACATATTTAAAT

Flanking Amino Acid:

KWICTNLTCPAECSVSGDIH

Intron Amino Acid Position:

488

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

79.7

35.3

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

84.3

0.77

0.8

76.2

37.5

Minor 5ss

41.2

-1

2.5

51.4

45.1

Minor BPS

56.8

0.29

1.6

69.57

40.9

Associated Gene:

Gene:

OTOG

Ensembl Gene ID:

ENSAPLG00000008072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008416

4613122 - 4697990

84869