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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46379201_46395104_R

Intron Information:

Intron Rank:
130760
Intron Class:
major
Intron Phase:
Intron Coordinates:
46379201 - 46395104
Intron Length:
15904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
TTCTCCAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
85.7
0.8
0.9
81.2
36.5
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
59
0.36
2
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017589
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034020
46378543 - 46395519
16977