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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46405020_46407664_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46405020 - 46407664
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAAGA
Flanking Amino Acid:
AVRTGWKSFKMNGITNCRMR
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
60.3
0.32
1.6
66.94
40.1

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032661
46404470 - 46502932
98463
ENSAPLT00000031324
46404419 - 46441719
37301
ENSAPLT00000009427
46404470 - 46502932
98463
ENSAPLT00000037952
46404419 - 46502132
97714