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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46405020_46415977_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46405020 - 46415977
Intron Length:
10958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAAGA
Flanking Amino Acid:
NPIGSMAVAVRNGITNCRMR
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
60.3
0.32
1.6
66.94
40.1

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023394
46404470 - 46505020
100551