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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46407689_46415977_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46407689 - 46415977
Intron Length:
8289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTT
Flanking Amino Acid:
NPIGSMAVAVRTGWKSFKMN
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.5
0.48
0.9
67.8
32.5
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
63.5
0.5
1.6
78.46
39

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032661
46404470 - 46502932
98463
ENSAPLT00000031324
46404419 - 46441719
37301
ENSAPLT00000009427
46404470 - 46502932
98463
ENSAPLT00000037952
46404419 - 46502132
97714