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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46416087_46474206_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46416087 - 46474206
Intron Length:
58120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAAAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
FFKRNGALLQVPPGVIQNGA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
48
-0.1
1.2
53.6
38.7
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032661
46404470 - 46502932
98463