About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46426880_46433238_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46426880 - 46433238
Intron Length:
6359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTGATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGGTTGATT
Flanking Amino Acid:
KMVEIPDHELDPDIDAATAM
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79
0.65
1
69.4
45.7
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
49.2
0.02
2.4
75.48
41.9

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037952
46404419 - 46502132
97714