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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46426880_46474206_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46426880 - 46474206
Intron Length:
47327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTGGTTGATT
Flanking Amino Acid:
FFKRNGALLQDPDIDAATAM
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79
0.65
1
69.4
45.7
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
49.2
0.02
2.4
75.48
41.9

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023394
46404470 - 46505020
100551
ENSAPLT00000009427
46404470 - 46502932
98463