Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_4642793_4644248_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4642793 - 4644248

Intron Length:

1456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTATGAATA

5'SS Class:

major

3'SS Sequence:

TGTTTTGTAAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAC

U12 Branch Point Sequence:

TCTTTTGTGACT

Flanking Amino Acid:

TFNGNMEDDFLSPVGVTEST

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.2

0.38

1.1

68.2

36.2

Major BPS

73.5

0.58

0.9

75.4

28.3

Major PPT

65.8

0.36

1.2

41.6

Minor 5ss

45.7

-0.5

2.9

63.5

42.1

Minor BPS

55.6

0.26

77.64

39.7

Associated Gene:

Gene:

OTOG

Ensembl Gene ID:

ENSAPLG00000008072

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008416

4613122 - 4697990

84869