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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_46433297_46474206_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46433297 - 46474206
Intron Length:
40910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTGAA
U12 Branch Point Sequence:
AATCCCCTATTC
Flanking Amino Acid:
FSREMEPFYKKLRLQQSVKK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
63.2
0.33
1.1
55.1
42.1
Major PPT
76.6
0.6
0.8
71.5
33.8
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
48.2
-0.1
1.9
60.65
38.1

Associated Gene:

Gene:
FOXN3
Ensembl Gene ID:
ENSAPLG00000009060
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037952
46404419 - 46502132
97714